PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00930.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 147aa    MW: 16479.2 Da    PI: 7.8902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00930.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-075980526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                             lC++f  + +C++Gd+C++ H+
  Rsa1.0_00930.1_g00008.1 59 LCNRFVSSNFCPFGDSCRYLHP 80
                             8********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.34E-12449No hitNo description
PfamPF062206.4E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.4325482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65681IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-65980IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-65979IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSNP HLRAKALWYS STPSDVNNHQ VSSFVPRGLC  60
NRFVSSNFCP FGDSCRYLHP NNIPGSTGYT TTNNNNTQLL AGLPNQHIQG SDIFSGRGEG  120
TGWFDLPPSL RPPPEQGYPQ LPSIDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660838.13e-91PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP119e-34C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A078G4X23e-91A0A078G4X2_BRANA; BnaA09g04110D protein
STRINGscaffold_602796.17e-75(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-76C3H family protein